Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920653.1_cds_XP_016469727.1_62247
CDS Infomation

[gene=LOC107792065] [db_xref=GeneID:107792065] [protein=pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like isoform X2] [protein_id=XP_016469727.1] [location=join(9391..9447,19205..19468,19671..19973,24261..24365,31014..31113,31633..31952,32961..33137,33225..33353,35138..35368)] [gbkey=CDS]
Sequence

ATGAATGTGATTTTGCGCTACTTTGGGAAGCTAAGTAGACGACAGGAGCTTTCTCAGGTG
TTTGATTGGATGCAGCAAAATCAGAAGATCAATGTTGCATCTTACAGCAGTTATGTAAAG
CTCATGGGAAAGAGCCTCAGTTCTGTTGAGGCTTTAGTAATGTACAAAAGCATCAAAGAT
AGGTCAACAAAGATTAATGTCTCAGTCTGTAATGCGCTTCTTAGTTGTCTAGTTAAGAAC
GGAAAATCTGAGAGCAGTCTCAAACTGTTTACTCAAATGAAGCGAGATGGTTTAGTACCA
GATGCTGTCACATATAGCACGCTTCTTGCAGGCTGTGCCAAAGTAAAAGATGGATACTCT
AAGGCCCTAGAGCTGGTTCAGGAGCTGATGTCTAATGGACTGCTAATGGATAGTGTGACT
TATGGGTCACTTCTTTCGGTATGTGCTTCACATAAAGAGTGCAATGAAGCTGAAAAGTAC
TTTCAGAAGATGAAAGCTGAAGGTCAGTCTCCTAATGTCTACCACTATAGCTCTTTGCTT
AATGCTTATTCGGTTGATGGAAATTACGAGAAGGCTGAAGCATTGATTGAAGAAATGAGA
TCTGCAGGTTTAGTATTAAATAAGGTGGTCTACACAACTTTGTTGAAGGTATACGTGAAA
GGAGGTTTCTTTGAGAAGTCAAAGGAACTATTAAAGGAGTTAGAAGCTTTTGGCTATGCT
AAGGATGAGATGCCATTTTGTCTCCTAATGGATGGCCTTGTAAAGTCTGGACTTCTTCTT
GAAGCAAAATCAGTATTTGATGAGATGATGGGAAAACATGTGAAAACTGATGGATACTCC
TATAGCATTATGATTTCAGCATTCTGCCGCAGTGGGCTTCTCGAAGATGCAAAGAAATTA
GCTTCTGAATTTGAAGAAAAATATGACAAATATGATGTAGTTATTTTGAATGCAATGCTC
TCTGCCTATTGCAGAGCAGGGGAAATAGAGAATGTAATGAGCATGATGAAGAAGATGGAT
GACTCTGCAATTAGTCCTGATTGGAATACCTTTAATATTCTTATAAGATATTTCTGCAAG
GAGAAGCTGTATTTGCTTGCTTATCGTACCATGCAGGACATGCATAGAAAAGGTCACCAG
CCAGAGGAGGGACTTTGTTCCTCTTTAATTTATTATCTTGGAAAGACAGATGCACATTCA
GAAGCATTTTCTGTATATAACATGCTGAGATATAGCAAAAGAACCATATCCAAATCCCTT
CATGAGAAGATTTTGCACATTTTGATTGCTGGGCGCCTTCTCAAAGATGCTTATGTAGTT
GTCAAGGACAATGCAGGATTCATCTCCCGGCCGGCTATCAAAAGGTTTGCTGTCAACTTC
ATGAGATCTGGCAATGTAAACTTAATCAATGATGTGATGAAGGCTATGCACAGCTCTGGC
CACCGGATTGATCAGGAATTATTTGATATGGCTATATCACGCTACGTTTCAAAACCAGAA
AAGAAGGAACTACTTCTGCAGTTACTGGAGTGGATGTCTGGTCAAGGCTATGTTATTGAT
CCATCAACAAGAAATTTGATTCTGAAGAACTCTCACTTGTTTGGCCATCAACTTATTGCT
GAGTCATTGTCCAAGCAGCTTGTGGTGTCAAAAAAGGTGAAACCTCACAAGGAAAATGCA
AGATAA

Peptide Sequence

PEP ID

XP_016469727.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MNVILRYFGKLSRRQELSQVFDWMQQNQKINVASYSSYVKLMGKSLSSVEALVMYKSIKD
RSTKINVSVCNALLSCLVKNGKSESSLKLFTQMKRDGLVPDAVTYSTLLAGCAKVKDGYS
KALELVQELMSNGLLMDSVTYGSLLSVCASHKECNEAEKYFQKMKAEGQSPNVYHYSSLL
NAYSVDGNYEKAEALIEEMRSAGLVLNKVVYTTLLKVYVKGGFFEKSKELLKELEAFGYA
KDEMPFCLLMDGLVKSGLLLEAKSVFDEMMGKHVKTDGYSYSIMISAFCRSGLLEDAKKL
ASEFEEKYDKYDVVILNAMLSAYCRAGEIENVMSMMKKMDDSAISPDWNTFNILIRYFCK
EKLYLLAYRTMQDMHRKGHQPEEGLCSSLIYYLGKTDAHSEAFSVYNMLRYSKRTISKSL
HEKILHILIAGRLLKDAYVVVKDNAGFISRPAIKRFAVNFMRSGNVNLINDVMKAMHSSG
HRIDQELFDMAISRYVSKPEKKELLLQLLEWMSGQGYVIDPSTRNLILKNSHLFGHQLIA
ESLSKQLVVSKKVKPHKENAR

Transcript Sequence

Gene sequence data has not been registered.